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Wang J, Qi J, Zhao H, He S, Zhang Y, Wei S, Zhao F

Sci Rep. 2013. doi: 10.1038/srep01843

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Human milk metagenome: a functional capacity analysis.

Ward TL, Hosid S, Ioshikhes I, Altosaar I

BMC Microbiol. 2013. doi: 10.1186/1471-2180-13-116

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Diversity of the vaginal microbiome correlates with preterm birth.

Hyman RW, Fukushima M, Jiang H, Fung E, Rand L, Johnson B, Vo KC, Caughey AB, Hilton JF, Davis RW, Giudice LC

Reprod Sci. Jan 2014. doi: 10.1177/1933719113488838

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Molecular studies neglect apparently gram-negative populations in the human gut microbiota.

Hugon P, Lagier JC, Robert C, Lepolard C, Papazian L, Musso D, Vialettes B, Raoult D

J Clin Microbiol. Oct 2013. doi: 10.1128/JCM.00473-13

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An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome.

Edlund A, Yang Y, Hall AP, Guo L, Lux R, He X, Nelson KE, Nealson KH, Yooseph S, Shi W, McLean JS

Microbiome. 2013. doi: 10.1186/2049-2618-1-25

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Application of 16S rRNA metagenomics to analyze bacterial communities at a respiratory care centre in Taiwan.

Tang CY, Yiu SM, Kuo HY, Tan TS, Liao KH, Liu CC, Hon WK, Liou ML

Appl Microbiol Biotechnol. Mar 2015. doi: 10.1007/s00253-014-6176-7

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The methylome of the gut microbiome: disparate Dam methylation patterns in intestinal Bacteroides dorei.

Leonard MT, Davis-Richardson AG, Ardissone AN, Kemppainen KM, Drew JC, Ilonen J, Knip M, Simell O, Toppari J, Veijola R, Hyöty H, Triplett EW

Front Microbiol. 2014. doi: 10.3389/fmicb.2014.00361

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The dynamics of a family's gut microbiota reveal variations on a theme.

Schloss PD, Iverson KD, Petrosino JF, Schloss SJ

Microbiome. 2014. doi: 10.1186/2049-2618-2-25

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Polyphasic analysis of a middle ages coprolite microbiota, Belgium.

Appelt S, Armougom F, Le Bailly M, Robert C, Drancourt M

PLoS One. 2014. doi: 10.1371/journal.pone.0088376

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Metagenomic Analysis of the Dynamic Changes in the Gut Microbiome of the Participants of the MARS-500 Experiment, Simulating Long Term Space Flight.

Mardanov AV, Babykin MM, Beletsky AV, Grigoriev AI, Zinchenko VV, Kadnikov VV, Kirpichnikov MP, Mazur AM, Nedoluzhko AV, Novikova ND, Prokhortchouk EB, Ravin NV, Skryabin KG, Shestakov SV

Acta Naturae. Jul 2013

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Diet and the development of the human intestinal microbiome

Voreades N, Kozil A, Weir TL.

Front Microbiol. 2014 Sep 22;5:494. doi: 10.3389/fmicb.2014.00494. eCollection 2014.

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Impact Of Lifestyle On The Gut Microbiota Of Healthy Infants And Their Mothers - The Aladdin Birth Cohort.

Hesla HM1, Stenius F, Jäderlund L, Nelson R, Engstrand L, Alm J, Dicksved J.

FEMS Microbiol Ecol. 2014 Dec;90(3):791-801. doi: 10.1111/1574-6941.12434. Epub 2014 Nov 3.

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Links between diet, gut microbiota composition and gut metabolism.

Flint HJ, Duncan SH, Scott KP, Louis P.

Proc Nutr Soc. 2015 Feb;74(1):13-22. doi: 10.1017/S0029665114001463. Epub 2014 Sep 30.

 

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The gastrointestinal tract microbiome, probiotics, and mood.

Vitetta L1, Bambling M, Alford H.

Inflammopharmacology. 2014 Dec;22(6):333-9. doi: 10.1007/s10787-014-0216-x. Epub 2014 Sep 30.

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The intestinal microbiota composition and weight development in children: the koala birth cohort study

Scheepers LE1, Penders J2, Mbakwa CA1, Thijs C1, Mommers M1, Arts IC3.

Int J Obes (Lond). 2015 Jan;39(1):16-25. doi: 10.1038/ijo.2014.178. Epub 2014 Oct 9.

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Microbes Central to Human Reproduction

Reid G1, Brigidi P, Burton JP, Contractor N, Duncan S, Fargier E, Hill C, Lebeer S, Martín R, McBain AJ, Mor G, O'Neill C,Rodríguez JM, Swann J, van Hemert S, Ansell J. Am J...

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The intestinal microbiome in early life: health and disease

Arrieta MC1, Stiemsma LT2, Amenyogbe N2, Brown EM1, Finlay B3.

Front Immunol. 2014 Sep 5;5:427. doi: 10.3389/fimmu.2014.00427. eCollection 2014.

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Identification of Aminoglycoside and β-Lactam Resistance Genes from within an Infant Gut Functional Metagenomic Library.

Fouhy F1, Ogilvie LA2, Jones BV3, Ross RP4, Ryan AC5, Dempsey EM6, Fitzgerald GF7, Stanton C4, Cotter PD4. PLoS One. 2014 Sep 23;9(9):e108016. doi: 10.1371/journal.pone.0108016. eCollection 2014. ...

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Maternal influences on fetal microbial colonization and immune development.

Romano-Keeler J, Weitkamp JH.

Pediatr Res. 2015 Jan;77(1-2):189-95. doi: 10.1038/pr.2014.163. Epub 2014 Oct 13.

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Of the bugs that shape us: maternal obesity, the gut microbiome and long-term disease risk.

Gohir W1, Ratcliffe EM2, Sloboda DM3.

Pediatr Res. 2015 Jan;77(1-2):196-204. doi: 10.1038/pr.2014.169. Epub 2014 Oct 14.

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The small intestine microbiota, nutritional modulation and relevance for health.

Aidy SE1, van den Bogert B2, Kleerebezem M3.

Curr Opin Biotechnol. 2015 Apr;32:14-20. doi: 10.1016/j.copbio.2014.09.005. Epub 2014 Oct 8.

 

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Gut Microbiota, the Immune System, and Diet Influence the Neonatal Gut-Brain-Axis.

Sherman MP1, Zaghouani H2, Niklas V3.

Pediatr Res. 2015 Jan;77(1-2):127-35. doi: 10.1038/pr.2014.161. Epub 2014 Oct 10.

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Linking Fat Intake, the Intestinal Microbiome and Necrotizing Enterocolitis in Premature Infants.

Robinson DT1, Caplan MS2.

Pediatr Res. 2015 Jan;77(1-2):121-6. doi: 10.1038/pr.2014.155. Epub 2014 Oct 10.

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Human genetics shape the gut microbiome.

Goodrich JK1, Waters JL1, Poole AC1, Sutter JL1, Koren O1, Blekhman R2, Beaumont M3, Van Treuren W4, Knight R5, Bell JT3,Spector TD3, Clark AG2, Ley RE6. Cell. 2014 Nov 6;159(4):789-99. doi:...

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Paleomicrobiology: revealing fecal microbiomes of ancient indigenous cultures.

Cano RJ1, Rivera-Perez J2, Toranzos GA2, Santiago-Rodriguez TM3, Narganes-Storde YM4, Chanlatte-Baik L4, García-Roldán E2, Bunkley-Williams L5, Massey SE2. PLoS One. 2014 Sep 10;9(9):e106833. doi: 10.1371/journal.pone.0106833....

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Metagenomic analysis of the impact of nitrofurantoin treatment on the human faecal microbiota.

Vervoort J, Xavier BB, Stewardson A, Coenen S, Godycki-Cwirko M, Adriaenssens N, Kowalczyk A, Lammens C, Harbarth S, Goossens H, Malhotra-Kumar S

J Antimicrob Chemother. Mar 2015

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Application of metagenomics in the human gut microbiome.

Wang WL, Xu SY, Ren ZG, Tao L, Jiang JW, Zheng SS

World J Gastroenterol. Jan 2015. doi: 10.3748/wjg.v21.i3.803

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The role of the gut microbiome in the healthy adult status.

D'Argenio V, Salvatore F

Clin Chim Acta. Jan 2015

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The preterm placental microbiome varies in association with excess maternal gestational weight gain.

Antony KM, Ma J, Mitchell KB, Racusin DA, Versalovic J, Aagaard K

Am J Obstet Gynecol. Dec 2014

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Metagenomic analyses of bacteria on human hairs: a qualitative assessment for applications in forensic science.

Tridico SR, Murray DC, Addison J, Kirkbride KP, Bunce M

Investig Genet. 2014. doi: 10.1186/s13323-014-0016-5

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Exploring the influence of the gut microbiota and probiotics on health: a symposium report.

Thomas LV, Ockhuizen T, Suzuki K

Br J Nutr. Jul 2014. doi: 10.1017/S0007114514001275

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The placenta harbors a unique microbiome.

Aagaard K, Ma J, Antony KM, Ganu R, Petrosino J, Versalovic J

Sci Transl Med. May 2014. doi: 10.1126/scitranslmed.3008599

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Enhanced microbial diversity in the saliva microbiome induced by short-term probiotic intake revealed by 16S rRNA sequencing on the IonTorrent PGM platform.

Dassi E, Ballarini A, Covello G, Quattrone A, Jousson O, De Sanctis V, Bertorelli R, Denti MA, Segata N

J Biotechnol. Nov 2014. doi: 10.1016/j.jbiotec.2014.03.024S0168-1656(14)00145-X

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Metagenomics and innate immunity - a unique partnership or a battlefield?

Russell JA, Boyd JH

J Innate Immun. 2014. doi: 10.1159/000359977

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Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants.

Brooks B, Firek BA, Miller CS, Sharon I, Thomas BC, Baker R, Morowitz MJ, Banfield JF

Microbiome. 2014. doi: 10.1186/2049-2618-2-1

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