Culturomics identified 11 new bacterial species from a single anorexia nervosa stool sample.

Pfleiderer A, Lagier JC, Armougom F, Robert C, Vialettes B, Raoult D

Eur J Clin Microbiol Infect Dis. Nov 2013. doi: 10.1007/s10096-013-1900-2

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The Fecal Microbiome in Pediatric Patients With Short Bowel Syndrome

Davidovics ZH, Carter BA, Luna RA, Hollister EB, Shulman RJ, Versalovic J

JPEN J Parenter Enteral Nutr. Jun 2015

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Rapid Identification of Bacterial Species Associated with Bronchiectasis via Metagenomic Approach.

Yang DH, Zhang YY, DU PC, Xu L, Wang HY, Han N, Chen C, Gao ZC

Biomed Environ Sci. Nov 2014. doi: 10.3967/bes2014.126

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Intestinal anastomotic injury alters spatially defined microbiome composition and function.

Shogan BD, Smith DP, Christley S, Gilbert JA, Zaborina O, Alverdy JC

Microbiome. 2014. doi: 10.1186/2049-2618-2-35

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Elevated levels of circulating DNA in cardiovascular disease patients: metagenomic profiling of microbiome in the circulation.

Dinakaran V, Rathinavel A, Pushpanathan M, Sivakumar R, Gunasekaran P, Rajendhran J

PLoS One. 2014. doi: 10.1371/journal.pone.0105221

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Combination of metagenomics and culture-based methods to study the interaction between ochratoxin a and gut microbiota.

Guo M, Huang K, Chen S, Qi X, He X, Cheng WH, Luo Y, Xia K, Xu W

Toxicol Sci. Sep 2014. doi: 10.1093/toxsci/kfu128

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Microbiome analysis of stool samples from African Americans with colon polyps.

Brim H, Yooseph S, Zoetendal EG, Lee E, Torralbo M, Laiyemo AO, Shokrani B, Nelson K, Ashktorab H

PLoS One. 2013. doi: 10.1371/journal.pone.0081352

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The living dead: bacterial community structure of a cadaver at the onset and end of the bloat stage of decomposition.

Hyde ER, Haarmann DP, Lynne AM, Bucheli SR, Petrosino JF

PLoS One. 2013. doi: 10.1371/journal.pone.0077733

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Extracellular vesicles derived from gut microbiota, especially Akkermansia muciniphila, protect the progression of dextran sulfate sodium-induced colitis.

Kang CS, Ban M, Choi EJ, Moon HG, Jeon JS, Kim DK, Park SK, Jeon SG, Roh TY, Myung SJ, Gho YS, Kim JG, Kim YK

PLoS One. 2013. doi: 10.1371/journal.pone.0076520

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Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis.

Scher JU, Sczesnak A, Longman RS, Segata N, Ubeda C, Bielski C, Rostron T, Cerundolo V, Pamer EG, Abramson SB, Huttenhower C, Littman DR

Elife. 2013. doi: 10.7554/eLife.01202e01202

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Gut microbiota dysbiosis and bacterial community assembly associated with cholesterol gallstones in large-scale study.

Wu T, Zhang Z, Liu B, Hou D, Liang Y, Zhang J, Shi P

BMC Genomics. 2013. doi: 10.1186/1471-2164-14-669

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Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes.

Davis-Richardson AG, Ardissone AN, Dias R, Simell V, Leonard MT, Kemppainen KM, Drew JC, Schatz D, Atkinson MA, Kolaczkowski B, Ilonen J, Knip M, Toppari J, Nurminen N, Hyöty H, Veijola R, Simell T, Mykkänen J, Simell O, Triplett EW Front Microbiol....

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Human colon-derived soluble factors modulate gut microbiota composition.

Hevia A, Bernardo D, Montalvillo E, Al-Hassi HO, Fernández-Salazar L, Garrote JA, Milani C, Ventura M, Arranz E, Knight SC, Margolles A, Sánchez B

Front Oncol. 2015. doi: 10.3389/fonc.2015.00086

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Human colon-derived soluble factors modulate gut microbiota composition.

Hevia A, Bernardo D, Montalvillo E, Al-Hassi HO, Fernández-Salazar L, Garrote JA, Milani C, Ventura M, Arranz E, Knight SC, Margolles A, Sánchez B

Front Oncol. 2015. doi: 10.3389/fonc.2015.00086

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Skin microbiome and skin disease: the example of rosacea.

Picardo M1, Ottaviani M.

J Clin Gastroenterol. 2014 Nov-Dec;48 Suppl 1:S85-6. doi: 10.1097/MCG.0000000000000241.

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Diet, microbiota, and colorectal cancer.

Akin H1, Tözün N.

J Clin Gastroenterol. 2014 Nov-Dec;48 Suppl 1:S67-9. doi: 10.1097/MCG.0000000000000252.

 

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Genomics of schizophrenia: time to consider the gut microbiome?

Dinan TG1, Borre YE2, Cryan JF3.

Mol Psychiatry. 2014 Dec;19(12):1252-7. doi: 10.1038/mp.2014.93. Epub 2014 Oct 7.

 

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Minireview: Linking genetic variation in human Toll-like receptor 5 genes to the gutmicrobiome's potential to cause inflammation.

Leifer CA1, McConkey C2, Li S2, Chassaing B3, Gewirtz AT3, Ley RE4.

FEBS Lett. 2014 Nov 17;588(22):4214-22. doi: 10.1016/j.febslet.2014.09.024. Epub 2014 Oct 5.

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Tongue images and tongue coating microbiome in patients with colorectal cancer.

Han S1, Chen Y2, Hu J2, Ji Z3.

Microb Pathog. 2014 Dec;77:1-6. doi: 10.1016/j.micpath.2014.10.003. Epub 2014 Oct 2.

 

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Dietary modulation of the microbiome affects autoinflammatory disease.

Lukens JR1, Gurung P1, Vogel P2, Johnson GR1, Carter RA3, McGoldrick DJ3, Bandi SR1, Calabrese CR4, Walle LV5, Lamkanfi M5, Kanneganti TD1. Nature. 2014 Dec 11;516(7530):246-9. doi: 10.1038/nature13788....

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Functional Impacts of the Intestinal Microbiome in the Pathogenesis of Inflammatory Bowel Disease

Li J1, Butcher J, Mack D, Stintzi A.

Inflamm Bowel Dis. 2015 Jan;21(1):139-53. doi: 10.1097/MIB.0000000000000215.

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Rifaximin, gut microbes and mucosal inflammation: unraveling a complex relationship

Gao J, Gillilland M, Owyang C.

Gut Microbes. 2014 Jul 1;5(4):571-5. doi: 10.4161/gmic.32130.

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Schizophrenia and the gut-brain axis

Nemani K1, Hosseini Ghomi R2, McCormick B3, Fan X3.

Prog Neuropsychopharmacol Biol Psychiatry. 2015 Jan 2;56:155-60. doi: 10.1016/j.pnpbp.2014.08.018. Epub 2014 Sep 19.

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Effects of Gluten-Free, Dairy-Free Diet on Childhood Nephrotic Syndrome and Gut Microbiota.

Uy N1, Graf L1, Lemley K2, Kaskel F1.

Pediatr Res. 2015 Jan;77(1-2):252-5. doi: 10.1038/pr.2014.159. Epub 2014 Oct 13.

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Intraindividual variation in core microbiota in peri-implantitis and periodontitis.

Maruyama N1, Maruyama F2, Takeuchi Y1, Aikawa C2, Izumi Y1, Nakagawa I2.

Sci Rep. 2014 Oct 13;4:6602. doi: 10.1038/srep06602.

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Understanding the role of gut microbiome in metabolic disease risk.

Sanz Y1, Olivares M1, Moya-Pérez A1, Agostoni C2.

Pediatr Res. 2015 Jan;77(1-2):236-44. doi: 10.1038/pr.2014.170. Epub 2014 Oct 14.

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Microbiome/microbiota and allergies.

Inoue Y1, Shimojo N.

Semin Immunopathol. 2015 Jan;37(1):57-64. doi: 10.1007/s00281-014-0453-5. Epub 2014 Oct 18.

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Microbial Communities in the Upper Respiratory Tract of Patients with Asthma and Chronic Obstructive Pulmonary Disease.

Park H1, Shin JW2, Park SG3, Kim W1.

PLoS One. 2014 Oct 16;9(10):e109710. doi: 10.1371/journal.pone.0109710. eCollection 2014.

 

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Specific Microbiome Changes in a Mouse Model of Parenteral Nutrition Associated Liver Injury and Intestinal Inflammation.

Harris JK1, El Kasmi KC2, Anderson AL2, Devereaux MW2, Fillon SA2, Robertson CE3, Wagner BD4, Stevens MJ1, Pace NR3,Sokol RJ2. PLoS One. 2014 Oct 20;9(10):e110396. doi: 10.1371/journal.pone.0110396. eCollection...

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Microbial Diversity Similarities in Periodontal Pockets and Atheromatous Plaques of Cardiovascular Disease Patients.

Serra E Silva Filho W1, Casarin RC2, Nicolela Junior EL3, Passos HM3, Sallum AW4, Gonçalves RB5.

PLoS One. 2014 Oct 16;9(10):e109761. doi: 10.1371/journal.pone.0109761. eCollection 2014.

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Decreased bacterial diversity characterizes an altered gut microbiota in psoriatic arthritis and resembles dysbiosis of inflammatory bowel disease.

Scher JU1, Ubeda C, Artacho A, Attur M, Isaac S, Reddy SM, Marmon S, Neimann A, Brusca S, Patel T, Manasson J, Pamer EG,Littman DR, Abramson SB. Arthritis Rheumatol. 2015 Jan;67(1):128-39....

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Alterations of the gut microbiome and metabolome in alcoholic liver disease.

Zhong W, Zhou Z.

World J Gastrointest Pathophysiol. 2014 Nov 15;5(4):514-22. doi: 10.4291/wjgp.v5.i4.514.

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Enteric microbiota leads to new therapeutic strategies for ulcerative colitis.

Chen WX, Ren LH, Shi RH.

World J Gastroenterol. 2014 Nov 14;20(42):15657-63. doi: 10.3748/wjg.v20.i42.15657.

 

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Dietary patterns differently associate with inflammation and gut microbiota in overweight and obese subjects.

Kong LC1, Holmes BA2, Cotillard A1, Habi-Rachedi F2, Brazeilles R3, Gougis S4, Gausserès N2, Cani PD5, Fellahi S6, Bastard JP6, Kennedy SP7, Doré J7, Ehrlich SD7, Zucker JD1, Rizkalla...

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Microbiome of the placenta in pre-eclampsia supports the role of bacteria in the multifactorial cause of pre-eclampsia.

Amarasekara R, Jayasekara RW, Senanayake H, Dissanayake VH

J Obstet Gynaecol Res. Dec 2014. doi: 10.1111/jog.12619

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Exploring preterm birth as a polymicrobial disease: an overview of the uterine microbiome.

Payne MS, Bayatibojakhi S

Front Immunol. 2014. doi: 10.3389/fimmu.2014.00595

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Gut dysbiosis in acute-on-chronic liver failure and its predictive value for mortality.

Chen Y, Guo J, Qian G, Fang D, Shi D, Guo L, Li L

J Gastroenterol Hepatol. Feb 2015. doi: 10.1111/jgh.12932

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The role of gut microbiota in the development of type 1, type 2 diabetes mellitus and obesity.

Tai N, Wong FS, Wen L

Rev Endocr Metab Disord. Mar 2015. doi: 10.1007/s11154-015-9309-0

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Recovery of the gut microbiome following fecal microbiota transplantation.

Seekatz AM, Aas J, Gessert CE, Rubin TA, Saman DM, Bakken JS, Young VB

MBio. 2014. doi: 10.1128/mBio.00893-14e00893-14

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The lung microbiome of Ugandan HIV-infected pneumonia patients is compositionally and functionally distinct from that of San Franciscan patients.

Iwai S, Huang D, Fong S, Jarlsberg LG, Worodria W, Yoo S, Cattamanchi A, Davis JL, Kaswabuli S, Segal M, Huang L, Lynch SV

PLoS One. 2014. doi: 10.1371/journal.pone.0095726

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Characterization of the intestinal microbiome of Hirschsprung's disease with and without enterocolitis.

Yan Z, Poroyko V, Gu S, Zhang Z, Pan L, Wang J, Bao N, Hong L

Biochem Biophys Res Commun. Mar 2014. doi: 10.1016/j.bbrc.2014.01.104S0006-291X(14)00138-7

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Metagenomic analysis of the stool microbiome in patients receiving allogeneic stem cell transplantation: loss of diversity is associated with use of systemic antibiotics and more pronounced in gastrointestinal graft-versus-host disease.

Holler E, Butzhammer P, Schmid K, Hundsrucker C, Koestler J, Peter K, Zhu W, Sporrer D, Hehlgans T, Kreutz M, Holler B, Wolff D, Edinger M, Andreesen R, Levine JE, Ferrara JL, Gessner A, Spang R, Oefner PJ Biol Blood Marrow Transplant. May 2014. doi:...

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Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants.

Brooks B, Firek BA, Miller CS, Sharon I, Thomas BC, Baker R, Morowitz MJ, Banfield JF

Microbiome. 2014. doi: 10.1186/2049-2618-2-1

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Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants.

Claud EC, Keegan KP, Brulc JM, Lu L, Bartels D, Glass E, Chang EB, Meyer F, Antonopoulos DA

Microbiome. 2013. doi: 10.1186/2049-2618-1-20

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Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships.

McHardy IH, Goudarzi M, Tong M, Ruegger PM, Schwager E, Weger JR, Graeber TG, Sonnenburg JL, Horvath S, Huttenhower C, McGovern DP, Fornace AJ, Borneman J, Braun J

Microbiome. 2013. doi: 10.1186/2049-2618-1-17

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