Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato).

Ottesen AR, González Peña A, White JR, Pettengill JB, Li C, Allard S, Rideout S, Allard M, Hill T, Evans P, Strain E, Musser S, Knight R, Brown E

BMC Microbiol. 2013. doi: 10.1186/1471-2180-13-114

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Taxonomic profiling and metagenome analysis of a microbial community from a habitat contaminated with industrial discharges.

Shah V, Zakrzewski M, Wibberg D, Eikmeyer F, Schlüter A, Madamwar D

Microb Ecol. Oct 2013. doi: 10.1007/s00248-013-0244-x

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Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass ensiling.

Eikmeyer FG, Köfinger P, Poschenel A, Jünemann S, Zakrzewski M, Heinl S, Mayrhuber E, Grabherr R, Pühler A, Schwab H, Schlüter A

J Biotechnol. Sep 2013. doi: 10.1016/j.jbiotec.2013.07.021S0168-1656(13)00317-9

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Exploring the diversity of extremely halophilic archaea in food-grade salts.

Henriet O, Fourmentin J, Delincé B, Mahillon J

Int J Food Microbiol. Nov 2014. doi: 10.1016/j.ijfoodmicro.2014.08.019S0168-1605(14)00423-1

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Microbiota characterization of a Belgian protected designation of origin cheese, Herve cheese, using metagenomic analysis.

Delcenserie V, Taminiau B, Delhalle L, Nezer C, Doyen P, Crevecoeur S, Roussey D, Korsak N, Daube G

J Dairy Sci. Oct 2014. doi: 10.3168/jds.2014-8225S0022-0302(14)00511-6

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Diversity of the bacterial community in the rice rhizosphere managed under conventional and no-tillage practices.

Aslam Z, Yasir M, Yoon HS, Jeon CO, Chung YR

J Microbiol. Dec 2013. doi: 10.1007/s12275-013-2528-8

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Evaluation of direct 16S rDNA sequencing as a metagenomics-based approach to screening bacteria in bottled water.

Hansen T, Skånseng B, Hoorfar J, Löfström C

Biosecur Bioterror. Sep 2013. doi: 10.1089/bsp.2012.0073

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Novel multispecies microbial consortia involved in lignocellulose and 5-hydroxymethylfurfural bioconversion.

Jiménez DJ, Korenblum E, van Elsas JD

Appl Microbiol Biotechnol. Mar 2014. doi: 10.1007/s00253-013-5253-7

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An Integrated Metagenomics/Metaproteomics Investigation of the Microbial Communities and Enzymes in Solid-state Fermentation of Pu-erh tea.

Zhao M, Zhang DL, Su XQ, Duan SM, Wan JQ, Yuan WX, Liu BY, Ma Y, Pan YH

Sci Rep. 2015. doi: 10.1038/srep10117

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Bloom of resident antibiotic-resistant bacteria in soil following manure fertilization.

Udikovic-Kolic N1, Wichmann F2, Broderick NA3, Handelsman J4.

Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15202-7. doi: 10.1073/pnas.1409836111. Epub 2014 Oct 6.

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Evaluation of immune response, microbiota, and blood markers after probiotic bacteria administration in obese mice induced by a high-fat diet.

Novotny Núñez I1, Maldonado Galdeano C2, de Moreno de LeBlanc A1, Perdigón G3.

Nutrition. 2014 Nov-Dec;30(11-12):1423-32. doi: 10.1016/j.nut.2014.03.025. Epub 2014 Apr 13.

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Impact of whole grains on the gut microbiota: the next frontier for oats?

Rose DJ.

Br J Nutr. 2014 Oct;112 Suppl 2:S44-9. doi: 10.1017/S0007114514002244.

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The effect of Lactobacillus rhamnosus hsryfm 1301 on the intestinal microbiota of a hyperlipidemic rat model.

Chen D, Yang Z, Chen X, Huang Y, Yin B, Guo F, Zhao H, Zhao T, Qu H, Huang J, Wu Y, Gu R1.

BMC Complement Altern Med. 2014 Oct 10;14:386. doi: 10.1186/1472-6882-14-386.

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Vegetable microbiomes: is there a connection among opportunistic infections, human health and our 'gut feeling'?

Berg G1, Erlacher A, Smalla K, Krause R.

Microb Biotechnol. 2014 Nov;7(6):487-95. doi: 10.1111/1751-7915.12159. Epub 2014 Sep 3.

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Metagenomics of ancient fermentation pits used for the production of chinese strong-aroma liquor.

Guo MY, Huo DQ1, Ghai R2, Rodriguez-Valera F2, Shen CH3, Zhang N3, Zhang SY3, Hou CJ4.

Genome Announc. 2014 Oct 23;2(5). pii: e01045-14. doi: 10.1128/genomeA.01045-14.

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Bacterial communities in the phylloplane of Prunus species.

Jo Y, Cho JK, Choi H, Chu H, Lian S, Cho WK

J Basic Microbiol. Apr 2015. doi: 10.1002/jobm.201400651

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Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine.

Sulaiman J, Gan HM, Yin WF, Chan KG

Front Microbiol. 2014. doi: 10.3389/fmicb.2014.00556

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Metagenomic analysis of the microbial community in fermented grape marc reveals that Lactobacillus fabifermentans is one of the dominant species: insights into its genome structure.

Campanaro S, Treu L, Vendramin V, Bovo B, Giacomini A, Corich V

Appl Microbiol Biotechnol. Jul 2014. doi: 10.1007/s00253-014-5795-3

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