In era7 Bioinformatics we are developing the following Open Source research projects:

Bio4j

Bio4j

Bio4j is a bioinformatics database that uses the new paradigm of graph databases. Bio4j includes most data available in UniProt KB (SwissProt + Trembl), Gene Ontology (GO), UniRef (50,90,100), RefSeq, NCBI taxonomy, and Expasy Enzyme DB.

 

See our publication about Bio4j:

http://biorxiv.org/content/biorxiv/early/2015/03/20/016758.full.pdf

 

See also: http://bio4j.com/


 

bg7

bg7

bg7 (Bacterial Genome 7) is a system specifically designed for NGS data and released under Open Source AGPLv3 license.  bg7 is an annotation system where the ORF prediction step is based on protein similarity.

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See also: http://bg7.ohnosequences.com/

Archivo: BG7_journal_pone_0049239.pdf